species:   Fugra
pid:       PID0900
parent:    FgmilR-7dps-61
paralog:   
locus:     NC_026476.1:6276265-6276348
matures:   ['UCCUUGGACUUCUUGAUCUC', 'GGUCACACAGAAGUCCAUGGGAAGGGACAACAU']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026476.1:6276265-6276348

109 out of bounds
22 alignments
8 proper strand
7 stranded perfect matches

                    ***********************************       **********************
GGUUGCCGUCCUGCUGAGGCAGGGUCACACAGAAGUCCAUGGGAAGGGACAACAUGCUUCGCAGUCCUUGGACUUCUUGAUCUC
...((((..........))))((((((...(((((((((......(((((....(((...))))))))))))))))))))))).
----------------------------------------------------------------UCCUUGGACUUCUUGAUCUC l=20 a=2 c
----------------------GGUCACACAGAAGUCCAUGGGAAGGGACAACAU----------------------------- l=33 a=0 c*
------------------------------------------------------UGCUUCGCAGUCCUUGGACUUCUU------ l=24 a=4 ma
----------------------GGUCACACAGAAGUCCAUGGGAAGGGACAACAU----------------------------- l=33 a=0 ma*

----------------------------------------------------------------UCCUUGGACUUCUUGAUCUC l=20 a=2 (c)
----------------------------------------------------------------UCCUUGGACUUCUUGAUCUu l=20 a=1 
---------------------------------------------------------UUCGCAGUCCUUGGACUUCUUGAUC-- l=25 a=1 
------------------------------------------------------UGCUUCGCAGUCCUUGGACUUCUU------ l=24 a=4 (ma)

mb-00011
ax-1001010
ku-01
ss-111110000000
fn-000
